Reference
Source index
Every source used on this site, what it supports, and whether its bibliographic record has been checked.
The policy. Where a claim is an experimental or theoretical result, it is attributed to the paper that first reported it, not to a review that repeats it. Reviews appear only where the claim is itself about the state of the field, and are tagged as such.
The honest part. verified means the DOI was resolved against the Crossref REST API and title, journal, year, volume and pages all matched what we assert. unverified means the details come from the primary literature but have not yet been machine-confirmed — check volume and pages before quoting. corrected means a commonly circulated version of the citation is wrong and we have fixed it.
Current state: 87 sources, 82 of them primary research papers, 29 machine-verified, 1 corrected, 57 awaiting verification.
| Year | Authors | Title / note | Published in | Status | Cited in |
|---|---|---|---|---|---|
| 2008 | Y. Abdiche et al. | Determining kinetics and affinities of protein interactions using a parallel real-time label-free biosensor, the Octet Characterisation of biolayer interferometry against SPR. |
Analytical Biochemistry 377, 209–217 | unverified primary |
Instruments, Optics and Fluidics, SPR Imaging, LSPR, BLI and Interaction Networks |
| 2009 | Y. N. Abdiche et al. | Exploring blocking assays using Octet, ProteOn, and Biacore biosensors Epitope binning across three platforms. |
Analytical Biochemistry 386, 172–180 | unverified primary |
Antibody Characterisation: Ranking, Binning and Mapping |
| 2014 | Y. N. Abdiche et al. | Expanding the ProteOn XPR36 biosensor into a 36 × 36 array format provides a fast and economical means of determining antibody affinities and epitope bins High-throughput binning of a large antibody panel; the source for the n² scaling argument. |
PLoS ONE 9, e92451 10.1371/journal.pone.0092451 |
unverified primary |
Instruments, Optics and Fluidics, Antibody Characterisation: Ranking, Binning and Mapping |
| 1989 | C. D. Bain et al. | Formation of monolayer films by the spontaneous assembly of organic thiols from solution onto gold The systematic study of alkanethiol SAM formation: kinetics, chain-length dependence, packing. |
Journal of the American Chemical Society 111, 321–335 10.1021/ja00183a049 |
verified primary |
Sensor Surfaces and Immobilisation Chemistry |
| 1994 | C. E. H. Berger, R. P. H. Kooyman, J. Greve | Resolution in surface plasmon microscopy Quantifies the lateral resolution limit imposed by plasmon propagation length — the reason imaging spots cannot be made arbitrarily small. |
Review of Scientific Instruments 65, 2829–2836 10.1063/1.1144627 |
unverified primary |
Instruments, Optics and Fluidics, SPR Imaging, LSPR, BLI and Interaction Networks |
| 2004 | G. A. Canziani, S. Klakamp, D. G. Myszka | Kinetic screening of antibodies from crude hybridoma samples using Biacore Ranking antibodies directly from crude supernatant, without purification. |
Analytical Biochemistry 325, 301–307 10.1016/j.ab.2003.11.004 |
unverified primary |
Beyond 1:1 — Heterogeneity, Avidity and Distributions, Designing an Experiment That Will Work, Antibody Characterisation: Ranking, Binning and Mapping |
| 1997 | L. L. H. Christensen | Theoretical analysis of protein concentration determination using biosensor technology under conditions of partial mass transport limitation The theoretical basis for using transport-limited initial rate as a concentration readout. |
Analytical Biochemistry 249, 153–164 10.1006/abio.1997.2182 |
verified primary |
Binding Kinetics and Mass Transport, Designing an Experiment That Will Work |
| 1998 | M. A. Cooper et al. | Surface plasmon resonance analysis at a supported lipid monolayer Lipid-capture surfaces for membrane-associated interactions. |
Biochimica et Biophysica Acta — Biomembranes 1373, 101–111 10.1016/S0005-2736(98)00091-1 |
unverified primary |
Sensor Surfaces and Immobilisation Chemistry |
| 1987 | D. C. Cullen, R. G. W. Brown, C. R. Lowe | Detection of immuno-complex formation via surface plasmon resonance on gold-coated diffraction gratings Grating coupling rather than prism coupling — the alternative route to supplying the missing momentum. |
Biosensors 3, 211–225 10.1016/0265-928X(87)85002-2 |
unverified primary |
Evanescent Waves and Surface Plasmons |
| 1993 | R. Cush et al. | The resonant mirror: a novel optical biosensor for direct sensing of biomolecular interactions. Part I: Principle of operation and associated instrumentation | Biosensors and Bioelectronics 8, 347–354 | unverified primary |
Instruments, Optics and Fluidics |
| 2002 | Y. S. N. Day et al. | Direct comparison of binding equilibrium, thermodynamic, and rate constants determined by surface- and solution-based biophysical methods The head-to-head comparison of SPR against solution methods on the same systems. The primary source for the claim that a well-run surface measurement agrees with solution thermodynamics. |
Protein Science 11, 1017–1025 10.1110/ps.4330102 |
unverified primary |
What an SPR Instrument Actually Measures, Troubleshooting and Artefacts |
| 2004 | A. W. Drake, D. G. Myszka, S. L. Klakamp | Characterizing high-affinity antigen/antibody complexes by kinetic- and equilibrium-based methods What can and cannot be measured when the off-rate is very slow. |
Analytical Biochemistry 328, 35–43 10.1016/j.ab.2004.01.031 |
unverified primary |
Binding Kinetics and Mass Transport, Troubleshooting and Artefacts |
| 1900 | P. Drude | Zur Elektronentheorie der Metalle The free-electron model of metals, from which the negative permittivity that makes surface plasmons possible falls out. |
Annalen der Physik 306, 566–613 10.1002/andp.19003060312 |
unverified primary |
Evanescent Waves and Surface Plasmons |
| 1995 | P. R. Edwards et al. | Kinetics of protein–protein interactions at the surface of an optical biosensor | Analytical Biochemistry 231, 210–217 10.1006/abio.1995.1522 |
unverified primary |
not currently cited |
| 1941 | U. Fano | The theory of anomalous diffraction gratings and of quasi-stationary waves on metallic surfaces (Sommerfeld’s waves) Separated Wood’s anomaly into a sharp Rayleigh edge and a broad resonance — the latter being what we now call the surface plasmon. |
Journal of the Optical Society of America 31, 213–222 10.1364/JOSA.31.000213 |
verified primary |
Evanescent Waves and Surface Plasmons |
| 1978 | J. A. de Feijter, J. Benjamins, F. A. Veer | Ellipsometry as a tool to study the adsorption behavior of synthetic and biopolymers at the air–water interface Source of the de Feijter equation relating adsorbed mass to refractive index change via dn/dc — the reason a response unit can be read as a mass. |
Biopolymers 17, 1759–1772 | unverified primary |
What an SPR Instrument Actually Measures |
| 2000 | Å. Frostell-Karlsson et al. | Biosensor analysis of the interaction between immobilized human serum albumin and drug compounds for prediction of human serum albumin binding levels | Journal of Medicinal Chemistry 43, 1986–1992 | unverified primary |
Small Molecules and Fragment Screening |
| 2008 | A. M. Giannetti, B. D. Koch, M. F. Browner | Surface plasmon resonance based assay for the detection and characterization of promiscuous inhibitors The primary source for using superstoichiometric, non-saturating responses to identify aggregating and promiscuous compounds. |
Journal of Medicinal Chemistry 51, 574–580 10.1021/jm700952v |
unverified primary |
Beyond 1:1 — Heterogeneity, Avidity and Distributions, Troubleshooting and Artefacts, Small Molecules and Fragment Screening |
| 1993 | R. W. Glaser | Antigen–antibody binding and mass transport by convection and diffusion to a surface: a two-dimensional computer model of binding and dissociation kinetics Early numerical demonstration that transport to the surface, not chemistry, can set the observed rate. |
Analytical Biochemistry 213, 152–161 10.1006/abio.1993.1399 |
verified primary |
Binding Kinetics and Mass Transport |
| 1990 | Z. Grabarek, J. Gergely | Zero-length crosslinking procedure with the use of active esters The EDC/sulfo-NHS two-step chemistry underlying amine coupling. |
Analytical Biochemistry 185, 131–135 | unverified primary |
Sensor Surfaces and Immobilisation Chemistry |
| 1975 | N. M. Green | Avidin Source of the avidin–biotin affinity figures used to justify streptavidin capture surfaces. |
Advances in Protein Chemistry 29, 85–133 | unverified review |
Sensor Surfaces and Immobilisation Chemistry |
| 2002 | A. J. Haes, R. P. Van Duyne | A nanoscale optical biosensor: sensitivity and selectivity of an approach based on the localized surface plasmon resonance spectroscopy of triangular silver nanoparticles The localized SPR (LSPR) biosensor — no prism, no propagating wave, nanoparticle resonance instead. |
Journal of the American Chemical Society 124, 10596–10604 10.1021/ja020393x |
verified primary |
Instruments, Optics and Fluidics, SPR Imaging, LSPR, BLI and Interaction Networks |
| 2008 | M. D. Hämäläinen et al. | Label-free primary screening and affinity ranking of fragment libraries using parallel analysis of protein panels | Journal of Biomolecular Screening 13, 202–209 10.1177/1087057107313329 |
unverified primary |
Small Molecules and Fragment Screening |
| 1988 | E. Hochuli et al. | Genetic approach to facilitate purification of recombinant proteins with a novel metal chelate adsorbent The origin of the His-tag / Ni-NTA system later adapted to sensor surfaces. |
Nature Biotechnology 6, 1321–1325 10.1038/nbt1188-1321 |
unverified primary |
not currently cited |
| 1997 | J. Homola | On the sensitivity of surface plasmon resonance sensors with spectral interrogation Quantitative comparison of angular and spectral readout sensitivity. |
Sensors and Actuators B 41, 207–211 10.1016/S0925-4005(97)80297-3 |
unverified primary |
Instruments, Optics and Fluidics |
| 2008 | J. Homola | Surface plasmon resonance sensors for detection of chemical and biological species Cited only for statements about the breadth of the field, never for a specific experimental result. |
Chemical Reviews 108, 462–493 10.1021/cr068107d |
unverified review |
What an SPR Instrument Actually Measures |
| 1980 | J. G. Gordon II, S. Ernst | Surface plasmons as a probe of the electrochemical interface The origin of electrochemical SPR. |
Surface Science 101, 499–506 | unverified primary |
SPR Imaging, LSPR, BLI and Interaction Networks |
| 1972 | P. B. Johnson, R. W. Christy | Optical constants of the noble metals The measured dielectric functions of gold, silver and copper. Still the standard tabulation used in essentially every plasmonic simulation, including the one behind the interactive reflectivity figure on this site. |
Physical Review B 6, 4370–4379 10.1103/PhysRevB.6.4370 |
unverified primary |
Evanescent Waves and Surface Plasmons |
| 1991 | B. Johnsson, S. Löfås, G. Lindquist | Immobilization of proteins to a carboxymethyldextran-modified gold surface for biospecific interaction analysis in surface plasmon resonance sensors Note on this citation. This paper is widely cited with the page range 168–277, which is a transposition error that has propagated through several secondary sources. The Crossref record for this DOI gives 268–277, which is also what volume 198 of the journal actually contains. We use the corrected range. The EDC/NHS amine-coupling protocol, still the default immobilisation chemistry three decades later. |
Analytical Biochemistry 198, 268–277 10.1016/0003-2697(91)90424-R |
corrected primary |
What an SPR Instrument Actually Measures, Sensor Surfaces and Immobilisation Chemistry |
| 1995 | B. Johnsson et al. | Comparison of methods for immobilization to carboxymethyl dextran sensor surfaces by analysis of the specific activity of monoclonal antibodies Measures surface activity across coupling chemistries on the same antibody — the primary source for the claim that amine coupling inactivates a substantial fraction of ligand. |
Journal of Molecular Recognition 8, 125–131 10.1002/jmr.300080122 |
unverified primary |
What an SPR Instrument Actually Measures, Beyond 1:1 — Heterogeneity, Avidity and Distributions, Sensor Surfaces and Immobilisation Chemistry, Reporting, Reviewing and Reading Critically |
| 1991 | U. Jönsson et al. | Real-time biospecific interaction analysis using surface plasmon resonance and a sensor chip technology The paper describing the first commercial SPR biosensor as an integrated system — optics, microfluidics and sensor chip together. The primary source for what that instrument was and did. |
BioTechniques 11, 620–627 | unverified primary |
What an SPR Instrument Actually Measures, Evanescent Waves and Surface Plasmons, Instruments, Optics and Fluidics, Sensor Surfaces and Immobilisation Chemistry |
| 1997 | C. E. Jordan et al. | Surface plasmon resonance imaging measurements of DNA hybridization adsorption and streptavidin/DNA multilayer formation at chemically modified gold surfaces SPR imaging applied to a real multiplexed biological measurement. |
Analytical Chemistry 69, 4939–4947 10.1021/ac9709763 |
verified primary |
Instruments, Optics and Fluidics, SPR Imaging, LSPR, BLI and Interaction Networks |
| 1993 | R. C. Jorgenson, S. S. Yee | A fiber-optic chemical sensor based on surface plasmon resonance Wavelength-interrogated SPR on an optical fibre, with no moving parts. |
Sensors and Actuators B 12, 213–220 10.1016/0925-4005(93)80021-3 |
unverified primary |
Evanescent Waves and Surface Plasmons, Instruments, Optics and Fluidics |
| 1998 | L. S. Jung et al. | Quantitative interpretation of the response of surface plasmon resonance sensors to adsorbed films The reference treatment of how a thin adsorbed film of known thickness and refractive index maps onto an SPR shift, including the exponential weighting of the evanescent field. |
Langmuir 14, 5636–5648 10.1021/la971228b |
unverified primary |
What an SPR Instrument Actually Measures, Instruments, Optics and Fluidics, Troubleshooting and Artefacts, SPR Imaging, LSPR, BLI and Interaction Networks |
| 1991 | R. Karlsson, A. Michaelsson, L. Mattsson | Kinetic analysis of monoclonal antibody–antigen interactions with a new biosensor based analytical system The paper that established that a commercial SPR instrument could return separate association and dissociation rate constants, not merely an affinity. |
Journal of Immunological Methods 145, 229–240 10.1016/0022-1759(91)90331-9 |
verified primary |
What an SPR Instrument Actually Measures |
| 1994 | R. Karlsson et al. | Kinetic and concentration analysis using BIA technology | Methods 6, 99–110 10.1006/meth.1994.1013 |
verified primary |
What an SPR Instrument Actually Measures, Reading Sensorgrams by Eye, Binding Kinetics and Mass Transport, Designing an Experiment That Will Work |
| 1997 | R. Karlsson, A. Fält | Experimental design for kinetic analysis of protein–protein interactions with surface plasmon resonance biosensors Where the low-density / high-flow-rate / analyte-range design rules come from. |
Journal of Immunological Methods 200, 121–133 10.1016/S0022-1759(96)00195-0 |
verified primary |
What an SPR Instrument Actually Measures, Instruments, Optics and Fluidics, Reading Sensorgrams by Eye, Binding Kinetics and Mass Transport, Designing an Experiment That Will Work, Small Molecules and Fragment Screening, SPR Imaging, LSPR, BLI and Interaction Networks |
| 1999 | R. Karlsson | Affinity analysis of non-steady-state data obtained under mass transport limited conditions using BIACORE technology | Journal of Molecular Recognition 12, 285–292 | unverified primary |
not currently cited |
| 2000 | R. Karlsson et al. | Biosensor analysis of drug–target interactions: direct and competitive binding assays for investigation of interactions between thrombin and thrombin inhibitors | Analytical Biochemistry 278, 1–13 | unverified primary |
Small Molecules and Fragment Screening |
| 2006 | R. Karlsson et al. | Analyzing a kinetic titration series using affinity biosensors Single-cycle kinetics: the whole concentration series in one injection sequence, no regeneration. |
Analytical Biochemistry 349, 136–147 10.1016/j.ab.2005.09.034 |
unverified primary |
Reading Sensorgrams by Eye, Designing an Experiment That Will Work |
| 2006 | P. S. Katsamba et al. | Kinetic analysis of a high-affinity antibody/antigen interaction performed by multiple Biacore users | Analytical Biochemistry 352, 208–221 | unverified primary |
Beyond 1:1 — Heterogeneity, Avidity and Distributions, Processing Raw Data and Fitting It Honestly, Troubleshooting and Artefacts, Antibody Characterisation: Ranking, Binning and Mapping, Reporting, Reviewing and Reading Critically |
| 1968 | E. Kretschmann, H. Raether | Radiative decay of non-radiative surface plasmons excited by light Two pages that define the geometry used by essentially every commercial SPR instrument built since. |
Zeitschrift für Naturforschung A 23, 2135–2136 10.1515/zna-1968-1247 |
verified primary |
Evanescent Waves and Surface Plasmons |
| 1971 | E. Kretschmann | Die Bestimmung optischer Konstanten von Metallen durch Anregung von Oberflächenplasmaschwingungen (The determination of the optical constants of metals by excitation of surface plasmons) The quantitative treatment: how dip position, depth and width relate to the metal’s dielectric function and film thickness. |
Zeitschrift für Physik 241, 313–324 10.1007/BF01395428 |
verified primary |
Evanescent Waves and Surface Plasmons, Instruments, Optics and Fluidics, Sensor Surfaces and Immobilisation Chemistry |
| 1999 | J. Lahiri et al. | A strategy for the generation of surfaces presenting ligands on self-assembled monolayers: synthesis, characterization, and surface plasmon resonance studies Two-dimensional low-fouling surfaces as an alternative to hydrogels, characterised by SPR. |
Analytical Chemistry 71, 777–790 10.1021/ac980959t |
unverified primary |
Sensor Surfaces and Immobilisation Chemistry |
| 1983 | B. Liedberg, C. Nylander, I. Lundström | Surface plasmon resonance for gas detection and biosensing The founding paper of SPR biosensing: IgG adsorbed on a silver film, anti-IgG detected from solution, no label. |
Sensors and Actuators 4, 299–304 10.1016/0250-6874(83)85036-7 |
verified primary |
What an SPR Instrument Actually Measures, Evanescent Waves and Surface Plasmons |
| 1990 | S. Löfås, B. Johnsson | A novel hydrogel matrix on gold surfaces in surface plasmon resonance sensors for fast and efficient covalent immobilization of ligands The carboxymethyl dextran hydrogel — the single most consequential surface-chemistry paper in the field. |
Journal of the Chemical Society, Chemical Communications, 1526–1528 10.1039/C39900001526 |
verified primary |
Evanescent Waves and Surface Plasmons, Instruments, Optics and Fluidics, Sensor Surfaces and Immobilisation Chemistry |
| 1995 | S. Löfås et al. | Methods for site controlled coupling to carboxymethyldextran surfaces in surface plasmon resonance sensors Thiol, aldehyde and other orientation-controlling couplings beyond plain amine chemistry. |
Biosensors and Bioelectronics 10, 813–822 10.1016/0956-5663(95)99220-F |
verified primary |
Sensor Surfaces and Immobilisation Chemistry, Antibody Characterisation: Ranking, Binning and Mapping |
| 1995 | T. A. Morton, D. G. Myszka, I. M. Chaiken | Interpreting complex binding kinetics from optical biosensors: a comparison of analysis by linearization, the integrated rate equation, and numerical integration Introduced numerical integration to biosensor analysis, which is why arbitrary interaction models became fittable. |
Analytical Biochemistry 227, 176–185 10.1006/abio.1995.1268 |
verified primary |
Binding Kinetics and Mass Transport, Processing Raw Data and Fitting It Honestly |
| 1997 | D. G. Myszka et al. | Kinetic analysis of a protein antigen–antibody interaction limited by mass transport on an optical biosensor | Biophysical Chemistry 64, 127–137 | unverified primary |
Binding Kinetics and Mass Transport |
| 1998 | D. G. Myszka et al. | Extending the range of rate constants available from BIACORE: interpreting mass transport-influenced binding data Shows transport can be fitted rather than merely avoided, and defines the transport coefficient kₜ. |
Biophysical Journal 75, 583–594 10.1016/S0006-3495(98)77549-6 |
verified primary |
Reading Sensorgrams by Eye, Binding Kinetics and Mass Transport, Beyond 1:1 — Heterogeneity, Avidity and Distributions, Designing an Experiment That Will Work, Processing Raw Data and Fitting It Honestly, Troubleshooting and Artefacts |
| 1999 | D. G. Myszka | Improving biosensor analysis Origin of double referencing and blank-injection subtraction as standard practice. |
Journal of Molecular Recognition 12, 279–284 | unverified primary |
What an SPR Instrument Actually Measures, Instruments, Optics and Fluidics, Reading Sensorgrams by Eye, Designing an Experiment That Will Work, Processing Raw Data and Fitting It Honestly, Troubleshooting and Artefacts |
| 2000 | D. G. Myszka | Kinetic, equilibrium, and thermodynamic analysis of macromolecular interactions with BIACORE | Methods in Enzymology 323, 325–340 10.1016/S0076-6879(00)23372-7 |
unverified primary |
Reading Sensorgrams by Eye, Processing Raw Data and Fitting It Honestly, Troubleshooting and Artefacts |
| 2004 | D. G. Myszka | Analysis of small-molecule interactions using Biacore S51 technology Establishes the surface-density and referencing requirements specific to low-molecular-weight analytes. |
Analytical Biochemistry 329, 316–323 10.1016/j.ab.2004.03.028 |
unverified primary |
Small Molecules and Fragment Screening |
| 2007 | I. Navratilova et al. | Thermodynamic benchmark study using Biacore technology Multi-laboratory van’t Hoff analysis; quantifies how far thermodynamic parameters from SPR can be trusted. |
Analytical Biochemistry 364, 67–77 10.1016/j.ab.2007.01.031 |
unverified primary |
Processing Raw Data and Fitting It Honestly |
| 2010 | I. Navratilova, A. L. Hopkins | Fragment screening by surface plasmon resonance | ACS Medicinal Chemistry Letters 1, 44–48 | unverified primary |
Small Molecules and Fragment Screening |
| 1999 | B. P. Nelson et al. | Near-infrared surface plasmon resonance measurements of ultrathin films. 1. Angle shift and SPR imaging experiments Working in the near-infrared to deepen the sensing volume and sharpen the resonance. |
Analytical Chemistry 71, 3928–3934 10.1021/ac990517x |
unverified primary |
not currently cited |
| 1996 | L. Nieba, A. Krebber, A. Plückthun | Competition BIAcore for measuring true affinities: large differences from values determined from binding kinetics A direct demonstration that surface-measured kinetic constants can diverge substantially from solution affinities, and a solution-competition format that avoids the problem. |
Analytical Biochemistry 234, 155–165 10.1006/abio.1996.0067 |
unverified primary |
Reading Sensorgrams by Eye, Binding Kinetics and Mass Transport, Beyond 1:1 — Heterogeneity, Avidity and Distributions, Designing an Experiment That Will Work, Processing Raw Data and Fitting It Honestly, Troubleshooting and Artefacts, Antibody Characterisation: Ranking, Binning and Mapping, Reporting, Reviewing and Reading Critically |
| 1997 | L. Nieba et al. | BIACORE analysis of histidine-tagged proteins using a chelating NTA sensor chip Characterises His-tag capture on NTA surfaces, including the baseline drift caused by its finite stability. |
Analytical Biochemistry 252, 217–228 10.1006/abio.1997.2326 |
unverified primary |
Reading Sensorgrams by Eye, Troubleshooting and Artefacts |
| 1983 | R. G. Nuzzo, D. L. Allara | Adsorption of bifunctional organic disulfides on gold surfaces The discovery that sulfur-containing organics self-assemble into ordered monolayers on gold — the chemical foundation of every SPR chip. |
Journal of the American Chemical Society 105, 4481–4483 10.1021/ja00351a063 |
verified primary |
Evanescent Waves and Surface Plasmons, Sensor Surfaces and Immobilisation Chemistry |
| 1982 | C. Nylander, B. Liedberg, T. Lind | Gas detection by means of surface plasmon resonance SPR used as a transducer for the first time — for gas, one year before biomolecules. |
Sensors and Actuators 3, 79–88 10.1016/0250-6874(82)80008-5 |
verified primary |
What an SPR Instrument Actually Measures, Evanescent Waves and Surface Plasmons |
| 1993 | D. J. O’Shannessy et al. | Determination of rate and equilibrium binding constants for macromolecular interactions using surface plasmon resonance: use of nonlinear least squares analysis methods The case for fitting the sensorgram directly rather than linearising it. |
Analytical Biochemistry 212, 457–468 10.1006/abio.1993.1355 |
verified primary |
What an SPR Instrument Actually Measures, Reading Sensorgrams by Eye, Binding Kinetics and Mass Transport, Processing Raw Data and Fitting It Honestly |
| 1996 | D. J. O’Shannessy, D. J. Winzor | Interpretation of deviations from pseudo-first-order kinetic behavior in the characterization of ligand binding by biosensor technology Where non-exponential behaviour comes from, and how to tell the causes apart. |
Analytical Biochemistry 236, 275–283 10.1006/abio.1996.0167 |
unverified primary |
Reading Sensorgrams by Eye, Binding Kinetics and Mass Transport |
| 2001 | E. Ostuni et al. | A survey of structure–property relationships of surfaces that resist the adsorption of protein What makes a surface low-fouling, tested systematically across dozens of terminal chemistries. |
Langmuir 17, 5605–5620 10.1021/la010384m |
unverified primary |
Sensor Surfaces and Immobilisation Chemistry, Designing an Experiment That Will Work |
| 1968 | A. Otto | Excitation of nonradiative surface plasma waves in silver by the method of frustrated total reflection The Otto configuration: prism separated from the metal by a thin air/dielectric gap. |
Zeitschrift für Physik 216, 398–410 10.1007/BF01391532 |
verified primary |
Evanescent Waves and Surface Plasmons |
| 2006 | G. A. Papalia et al. | Comparative analysis of 10 small molecules binding to carbonic anhydrase II by different investigators using Biacore technology A benchmark study in which many labs measured the same interactions; the spread between labs is the honest measure of SPR reproducibility. |
Analytical Biochemistry 359, 94–105 | unverified primary |
Beyond 1:1 — Heterogeneity, Avidity and Distributions, Designing an Experiment That Will Work, Processing Raw Data and Fitting It Honestly, Troubleshooting and Artefacts, Antibody Characterisation: Ranking, Binning and Mapping |
| 2009 | S. Perspicace et al. | Fragment-based screening using surface plasmon resonance technology A full fragment cascade run by SPR, including the artefact filters. |
Journal of Biomolecular Screening 14, 337–349 10.1177/1087057109332595 |
unverified primary |
Small Molecules and Fragment Screening |
| 2016 | E. Pol et al. | Evaluation of calibration-free concentration analysis provided by Biacore systems CFCA validation study. NOTE: a candidate DOI of 10.1016/j.ab.2016.08.005 was checked during the audit and resolves to an unrelated paper on RNA lyophilisation, so no DOI is asserted here. Volume and pages should be confirmed before quoting. |
Analytical Biochemistry 510, 88–97 | unverified primary |
Binding Kinetics and Mass Transport |
| 1991 | K. L. Prime, G. M. Whitesides | Self-assembled organic monolayers: model systems for studying adsorption of proteins at surfaces Showed that oligo(ethylene glycol)-terminated monolayers resist protein adsorption — the origin of every low-fouling SPR surface. |
Science 252, 1164–1167 10.1126/science.252.5009.1164 |
verified primary |
Sensor Surfaces and Immobilisation Chemistry |
| 1988 | H. Raether | Surface Plasmons on Smooth and Rough Surfaces and on Gratings The standard monograph on surface plasmon physics, by one of the two people who first excited them optically. |
Springer Tracts in Modern Physics, vol. 111 10.1007/BFb0048317 |
unverified book |
Evanescent Waves and Surface Plasmons, Sensor Surfaces and Immobilisation Chemistry |
| 1907 | Lord Rayleigh | On the dynamical theory of gratings First attempt at a physical account of Wood’s anomaly, in terms of a diffracted order emerging at grazing angle. |
Proceedings of the Royal Society A 79, 399–416 10.1098/rspa.1907.0051 |
unverified primary |
Evanescent Waves and Surface Plasmons |
| 2008 | R. L. Rich, D. G. Myszka | Survey of the year 2007 commercial optical biosensor literature One instalment of the long-running literature survey. Cited only for claims about the state of the published literature, which is what it measures. |
Journal of Molecular Recognition 21, 355–400 10.1002/jmr.928 |
unverified review |
Processing Raw Data and Fitting It Honestly |
| 2010 | R. L. Rich, D. G. Myszka | Grading the commercial optical biosensor literature — Class of 2008: ‘The Mighty Binders’ Cited only where the claim is about the state of the published literature. The reporting checklist used on this site derives from this series. |
Journal of Molecular Recognition 23, 1–64 | unverified review |
Reporting, Reviewing and Reading Critically |
| 1998 | H. Roos et al. | Thermodynamic analysis of protein interactions with biosensor technology Van’t Hoff and Eyring analysis of SPR data across temperature. |
Journal of Molecular Recognition 11, 204–210 | unverified primary |
Processing Raw Data and Fitting It Honestly |
| 1988 | B. Rothenhäusler, W. Knoll | Surface–plasmon microscopy First demonstration that the SPR signal can be imaged, not merely averaged over a spot. |
Nature 332, 615–617 10.1038/332615a0 |
verified primary |
Instruments, Optics and Fluidics, SPR Imaging, LSPR, BLI and Interaction Networks |
| 1993 | T. G. M. Schmidt, A. Skerra | The random peptide library-assisted engineering of a C-terminal affinity peptide, useful for the detection and purification of a functional Ig Fv fragment The Strep-tag, widely used as a capture handle on sensor surfaces. |
Protein Engineering 6, 109–122 10.1093/protein/6.1.109 |
unverified primary |
not currently cited |
| 1996 | P. Schuck | Kinetics of ligand binding to receptor immobilized in a polymer matrix, as detected with an evanescent wave biosensor. I. A computer simulation of the influence of mass transport | Biophysical Journal 70, 1230–1249 10.1016/S0006-3495(96)79681-9 |
verified primary |
Binding Kinetics and Mass Transport, Sensor Surfaces and Immobilisation Chemistry |
| 1996 | P. Schuck, A. P. Minton | Analysis of mass transport-limited binding kinetics in evanescent wave biosensors The two-compartment model in the form most SPR software still implements. |
Analytical Biochemistry 240, 262–272 10.1006/abio.1996.0356 |
verified primary |
Reading Sensorgrams by Eye, Binding Kinetics and Mass Transport, Beyond 1:1 — Heterogeneity, Avidity and Distributions, Designing an Experiment That Will Work, Troubleshooting and Artefacts |
| 1996 | G. B. Sigal et al. | A self-assembled monolayer for the binding and study of histidine-tagged proteins by surface plasmon resonance NTA/Ni(II) capture of His-tagged protein on an SPR surface — the origin of the NTA chip. |
Analytical Chemistry 68, 490–497 10.1021/ac9504023 |
verified primary |
Sensor Surfaces and Immobilisation Chemistry |
| 2002 | K. Sigmundsson et al. | Determination of active concentrations and association and dissociation rate constants of interacting biomolecules: an analytical solution to the theory for kinetic and mass transport limitations in biosensor technology and its experimental verification Analytical treatment of combined kinetic and transport limitation, with experimental validation. |
Biochemistry 41, 8263–8276 10.1021/bi020099h |
unverified primary |
Binding Kinetics and Mass Transport, Antibody Characterisation: Ranking, Binning and Mapping, Reporting, Reviewing and Reading Critically |
| 1991 | S. Sjölander, C. Urbaniczky | Integrated fluid handling system for biomolecular interaction analysis The microfluidic cartridge that made SPR a routine instrument rather than a physics experiment. |
Analytical Chemistry 63, 2338–2345 10.1021/ac00020a025 |
verified primary |
Evanescent Waves and Surface Plasmons, Instruments, Optics and Fluidics |
| 2008 | T. M. Squires, R. J. Messinger, S. R. Manalis | Making it stick: convection, reaction and diffusion in surface-based biosensors The general transport analysis for any surface-based sensor, in dimensionless form. The clearest statement of when a measured rate is chemistry and when it is delivery. |
Nature Biotechnology 26, 417–426 10.1038/nbt1388 |
unverified primary |
Instruments, Optics and Fluidics, Binding Kinetics and Mass Transport, Small Molecules and Fragment Screening, Reporting, Reviewing and Reading Critically |
| 1991 | E. Stenberg et al. | Quantitative determination of surface concentration of protein with surface plasmon resonance using radiolabeled proteins The calibration behind the response unit. Radiolabelled protein was used to tie SPR angle shift to actual surface mass, giving the ~1 RU ≈ 1 pg mm⁻² relation. |
Journal of Colloid and Interface Science 143, 513–526 10.1016/0021-9797(91)90284-F |
verified primary |
What an SPR Instrument Actually Measures |
| 2003 | J. Svitel et al. | Combined affinity and rate constant distributions of ligand populations from experimental surface binding kinetics and equilibria The distribution analysis that replaces "the surface has one kind of site" with a measured spectrum of sites. |
Biophysical Journal 84, 4062–4077 10.1016/S0006-3495(03)75132-7 |
verified primary |
Beyond 1:1 — Heterogeneity, Avidity and Distributions, Processing Raw Data and Fitting It Honestly |
| 1999 | R. A. Vijayendran, F. S. Ligler, D. E. Leckband | A computational reaction–diffusion model for the analysis of transport-limited kinetics | Analytical Chemistry 71, 5405–5412 10.1021/ac990672b |
unverified primary |
Binding Kinetics and Mass Transport, Designing an Experiment That Will Work |
| 1902 | R. W. Wood | On a remarkable case of uneven distribution of light in a diffraction grating spectrum The original observation of the dark bands now called Wood’s anomalies. Wood did not know he was looking at surface plasmons; nobody would for 66 years. |
The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science 4, 396–402 10.1080/14786440209462857 |
verified primary |
Evanescent Waves and Surface Plasmons |
| 1987 | E. M. Yeatman, E. A. Ash | Surface plasmon microscopy Independent demonstration of spatially resolved plasmon readout, published in the same period as the Nature report. |
Electronics Letters 23, 1091–1092 10.1049/el:19870762 |
unverified primary |
not currently cited |
| 2011 | H. Zhao, P. H. Brown, P. Schuck | On the distribution of protein refractive index increments Measured spread of dn/dc across proteins; the basis for treating ~0.185 mL g⁻¹ as near-universal and for knowing how wrong that assumption can be. |
Biophysical Journal 100, 2309–2317 | unverified primary |
What an SPR Instrument Actually Measures |